This page depicts a collection of software packages for the processing of data for Magnetic Tissue Properties Mapping, including QSM, SWI, and STI. Please help us to stay updated by sending your suggestions to magneticadmin@emtphub.org.
QSM packages
Toolboxes
- SEPIA
- including excessive number of common phase unwrapping, background field removal and dipole inversion methods (by Kwok-Shing Chan, RU)
- including excessive number of common phase unwrapping, background field removal and dipole inversion methods (by Kwok-Shing Chan, RU)
- Neurodesk
- MEDI (Cornell Group)
- STI Suite (by Chunlei Liu, UC Berkeley)
- JHUKKI QSM Toolbox (by Bergen + Li, JHU + KKI)
- FANSI (by Carlos Milovic, UC + UCL)
- QSM software (by Hongfu Sun, Ualberta)
- QSMxT pipeline (by Bollman + Stewart + Shaw, UQ)
- pyQSM (by Alan Kuurstra, UWO)
Single-step
- TGV (Neuroimaging Group – MUG)
- Water-fat TFI (by Christof Boehm, TUM)
- QSM software collection (by Berkin Bilgic, MGH)
- including TGV and L2
- TV (by Alan Kuurstra, UWO)
- AutoQSM (AMRI-Lab)
- MoDL-QSM (AMRI-Lab)
Dipole inversion
- INR-QSM (AMRI-Lab)
- AMP-PE (by Shuai Huang, Emory CN2L)
- ALOHA (BISPL Lab)
- NDI (by Daniel Polak, Siemens Healthineers)
- QSM software collection (by Berkin Bilgic, MGH)
- including BM4D; TGV; COSMOS; L1; L1 & L2; CF-L2
- QSMbox (by Julio Acosta-Cabronero, UCL)
- QSMnet & QSMnet+ (SNU-LIST Lab)
- TKD & Tikhonov (by A. Karsa & K. Shmueli, UCL)
- LPCNN (by Lai + Li + Sulam, JHU)
Chi separation
- Decompose QSM (by J. Chen & Ch. Liu, UC Berkeley; available upon request from Chunlei Liu)
APART-QSM (by Z. Li & H. Wei, SJTU) - Chi-separation (by H. Shin & M. Kim, SNU-LIST Lab)
Phase unwapping
Utilities
- QSM-CI online challenge (by Ashley Stewart, UQ)
- Bi-parametric Segmentation Toolbox (by Fahad Salman, UB)
- QSM tilt correction (by Oliver Kiersnowski, UCL)
- QSM ESP metric (by Maximilian Diefenbach, TUM)
- XSIM metric (by Carlos Milovic, PUCV)
- Deep Learning QSM tutorial (by Steffen Bollman, UQ)